PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01309.50
Common NameJCGZ_13298, LOC105639333
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 348aa    MW: 39046.7 Da    PI: 7.4138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01309.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-0787112127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+ C  f+  G C+ G++C+FaHg+
  Jcr4S01309.50  87 FKTRMCAKFRS-GNCRNGENCNFAHGM 112
                    69999999988.*************95 PP

2zf-CCCH29.61.2e-09152175225
                    -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                    k++lC+ f+ + +C+yGdrC+F H
  Jcr4S01309.50 152 KMKLCKKFYNGEECPYGDRCNFLH 175
                    789*******66************ PP

3zf-CCCH421.5e-13237263127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+lC  +  tG+C++G++C+FaHg+
  Jcr4S01309.50 237 WKTKLCTKWETTGQCPFGEKCHFAHGQ 263
                    8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-1582119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-884117IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-486112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.12286113IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-587112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7150177IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333150178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9152176IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7152175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-17233267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10235267IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6236263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535236264IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11237263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSYNDSQPPF MSAQPPYQSG TDAIGIWPQF PLNSNEQFDP HSQFEQHQPP YKRPRNSEDN  60
NSQSMNSRMP LPNNLPVNNK GTTNIFFKTR MCAKFRSGNC RNGENCNFAH GMQDLRQPPP  120
NWQELVGVGG GVRGEDERPS GNWEDDQRII HKMKLCKKFY NGEECPYGDR CNFLHEDPSK  180
FRDDIGRFRE SSAISIGTTG QPMLHGSGGL NAPEVSKSVN NVVSDAFRVN DMKPVYWKTK  240
LCTKWETTGQ CPFGEKCHFA HGQAELQLPG ERAEGEVGNA GCTLTKPPPI HANNICPSMT  300
ANVSSVIEEG QGKKCLLKWK GPKKINRIYG DWLDDLPLVQ NLTNQVES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078744.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-100C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A067KBJ10.0A0A067KBJ1_JATCU; Uncharacterized protein
STRINGPOPTR_0009s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-91C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]